PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 339aa    MW: 36798.7 Da    PI: 6.8443
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-1398142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
   XP_010518718.1  98 PWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 142
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.515320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.4491147IPR017930Myb domain
SuperFamilySSF466891.79E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1894146IPR006447Myb domain, plants
SMARTSM007173.6E-1195145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1195141IPR009057Homeodomain-like
CDDcd001672.28E-998143No hitNo description
PfamPF002496.3E-1198142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS RPGGHSGTGS  60
NNPGSPGDTP DHAAADGYAS EDFVAGSSSS RERKKGTPWT EEEHRMFLLG LQKLGKGDWR  120
GISRNYVTTR TPTQVASHAQ KYFIRQSNVS RRKRRSSLFD MVPDEVSDVA MEPQEAQPED  180
SHAETQMQGS DKLPAPAPSS ILEIEECESM DSTNSSTGEP PVTAEDNTQL QLPASFPVLY  240
PTYFSPFYSF TFPVWPAGYV PEPTKKEESH EILRPTAVHS KAPINVDELL GMSKLSLGES  300
EQQPLPLNLV GGSSTRQSAF HPSPASGGGS DMKSAIHAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518718.10.0PREDICTED: uncharacterized protein LOC104798365
TrEMBLR0EUD40.0R0EUD4_9BRAS; Uncharacterized protein
STRINGBra026253.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34262759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-179MYB_related family protein